Directors' Blog

A future without antibiotics
Last week was World Antibiotic Awareness week, an initiative of the World Health Organization (WHO) to raise awareness and understanding of antimicrobial resistance. To follow-up, here at Te Pūnaha Matatini we are having a week-long conversation about the health, social, economic, and environmental impacts of infectious diseases in Aotearoa New Zealand. In this post, I want to touch on what antimicrobial resistance is, and what a future without antimicrobial medicines could look like.
What is antimicrobial resistance and what is causing it?
Antimicrobials are chemicals that kill or stop the growth of microbes. But as microbes is the generic term for a multitude of life forms which differ in their genetic make-up, life-styles and habitats, so antimicrobials can be divided into different categories depending on what they target. Some antimicrobials work against all microbes, but others are more specific. Antivirals only work against particular viruses, antifungals only work against particular fungi and antibiotics only work against particular bacteria.
Antimicrobial resistance is when microbes develop the ability to stop antimicrobials from affecting them. As most microbes replicate themselves and their genetic material fairly rapidly (some can divide in just a few minutes), and they can grow to large numbers (easily reaching population sizes in the billions if they have the right conditions), there are plenty of opportunities for resistant mutants to arise purely by chance. These mutants can then grow quite happily in the presence of the antimicrobial. This happens wherever microbes encounter antimicrobials – in human and veterinary medicine, in agriculture, but also in sewage systems and out in the wider environment. More worryingly is when microbes gain the ability to share resistance between each other on mobile bits of genetic material. Then they don’t even need to be in the presence of the antimicrobial agent – they just need to meet the right kind of resistant microbe!
A major factor in the development of resistance is the misuse and overuse of antimicrobials. So being used when they aren’t needed, or not being used correctly. Another worry is the use of similar antimicrobials in human medicine and in agriculture. For example, a fungus commonly found in soil has become resistant to the antifungal pesticides used in gardening and agriculture. Because similar antifungals are used in human medicine, these resistant fungi are now able to cause almost untreatable infections in some vulnerable hospital patients. And these patients can become infected just by being in a bed next to an open window that looks out onto a garden!
Is antimicrobial resistance something we should be worried about?
Yes. Experts predict that within the next decade we will run out of antimicrobial medicines to treat many common infections. Part of the reason we are in this position is that most of the pharmaceutical industry pulled out of antimicrobial research decades ago, so the medicine cupboard is basically empty. Similarly, the vast majority of government and charity funding around the world has gone on researching non-communicable diseases. Any new antimicrobial compound discovered today could take a decade of development and testi before it would be available for doctors to use. The situation is a catastrophe on a par with global warming.
What are the most concerning examples of resistant strains of infectious diseases?
The major resistant bacteria that are circulating around the world are extended-spectrum beta-lactamase (ESBL) expressing strains of Escherichia coli and Klebsiella pneumoniae, which are of particular concern in hospitals, and some strains of Mycobacterium tuberculosis which causes the lung disease TB. There are an increasing number of strains of these bacteria that are sensitive to just one or two antibiotics, and some strains that are pretty much untreatable. Another resistant organism of growing concern globally is Neisseria gonorrhoeae which causes gonorrhoea. While most men with gonorrhoea will have symptoms when they have the disease, half of women can be asymptomatic so won’t know they are infected. Importantly, untreated gonorrhoea can lead to infertility.
What’s happening in New Zealand?
We wanted to show you the data, but can’t. It is publicly available on the web but Figure.NZ were denied permission to turn it into nice charts for you to see. What we can say is that the extremely resistant strains of E. coli, K. pneumoniae and M. tuberculosis we see here are mainly coming into New Zealand from countries like India, China, and those in south-east Asia. This is going to be an area to watch, especially given the importance of countries like China for trade and tourism in New Zealand.
N. gonorrhoeae is also one for us to watch as highly resistant strains have been reported in Australia. In New Zealand, gonorrhoea is not a notifiable disease so the only data we have is based on the voluntary provision of the numbers of diagnosed cases from laboratories and sexual health and family planning clinics. In 2014, that number was 3,038, with 977 of these cases in young people under the age of 19. Less than half of sexually active young people report using condoms which would protect them from infection. If we end up with a completely untreatable strain of N. gonorrhoeae taking hold in New Zealand this could have a huge impact on our future fertility.
The last organism of concern here is Methicillin Resistant Staphylococcus aureus (also known as MRSA) which is very much a problem of our own making. Over the last few years there has been a huge increase in the number of skin and soft tissue infections caused by S. aureus in New Zealand (1). Alongside this, there has been a huge increase in prescriptions for a topical antibiotic called fusidic acid. As a consequence, one of the major clones of S. aureus now causing disease in New Zealand is an MRSA clone which is resistant to fusidic acid (2).
Major misconceptions about antibiotics
There are a number of major misconceptions about antibiotics. Lots of people don’t know that bacteria and viruses are very different life-forms. This means that antivirals don’t work on bacteria, and antibiotics don’t work on viruses. In countries where antibiotics are available without prescription, many people confuse antibiotics with pain-killers, so will take antibiotics for things like a headache!
Another common misconception is that it is us that become resistant to antibiotics, rather than the microbes. Perhaps this is a misunderstanding between how antibiotics work (by killing the bacteria directly), versus what happens when we are vaccinated (our immune system is primed to recognise and fight off the invader).
But the biggest misconception is that people who don’t take antibiotics, or who take them very rarely, won’t be affected by antibiotic resistant bacteria – that the antibiotics will still work for them. It doesn’t matter if you’ve never had a course of antibiotics, or if you’ve had several, it all depends on the bacteria you get infected with. Similarly, healthy people who have never had a course of antibiotics could still have antibiotic-resistant superbugs living happily up their noses or in their guts. They can easily spread from person to person, or can be picked up while travelling overseas.
What does a future without antimicrobials look like?
A future without antimicrobials will affect us all; rich and poor, young and old. In a world without antimicrobials, previously treatable infections will once again become deadly, or may require amputation to stop them in their tracks. Because antimicrobials are also used to prevent infection in vulnerable people, it will also become life threateningly risky to do routine operations like caesarean sections and joint replacements, and treatments like chemotherapy for cancer.
Margaret Chan, Director-General of the World Health Organization, called antimicrobial resistance “…the end of modern medicine as we know it”. In a series of reports commissioned by the UK’s former Prime Minister David Cameron, economist Sir Jim O’Neill has estimated that without urgent action, antimicrobial resistance will kill 10 million people a year by 2050, more than will die from cancer. O’Neill has also put an economic cost on the issue, estimating that inaction will cost the world’s economy 100 trillion USD by 2050.
What should we be doing to combat antimicrobial resistance?
Combatting antimicrobial resistance requires a global effort to stop the overuse and misuse of antimicrobials in human and veterinary medicine, and in agriculture. It requires governments, philanthropists, charities and industry to invest serious money into antimicrobial discovery and development and research into new ways to combat infectious diseases. We also need quicker and better ways to diagnose infectious diseases so that patients can receive the right treatment as soon as possible.
Equally important is that we have a national conversation about how we all, the public, health workers, policymakers and the agricultural sector, can contribute to solving this global crisis from right here in New Zealand. I hope you’ll participate in this important discussion. Follow #infectedNZ on Twitter or Facebook, or leave a comment below.
References:
- Williamson DA, Zhang J, Ritchie SR, Roberts SA, Fraser JD, Baker MG (2014). Staphylococcus aureus infections in New Zealand, 2000-2011.Emerg Infect Dis. 2014 Jul;20(7):1156-61. doi: 10.3201/eid2007.131923.
- Williamson DA, Monecke S, Heffernan H, Ritchie SR, Roberts SA, Upton A, Thomas MG, Fraser JD (2014). High usage of topical fusidic acid and rapid clonal expansion of fusidic acid-resistant Staphylococcus aureus: a cautionary tale. Clin Infect Dis. 2014 Nov 15;59(10):1451-4. doi: 10.1093/cid/ciu658.
About:
Dr Siouxsie Wiles is Deputy Director of Te Pūnaha Matatini. She describes herself as a microbiologist and bioluminescence enthusiast. Head of the Bioluminescent Superbugs Lab at the University of Auckland, Siouxsie combines her twin passions to understand infectious diseases.
What is InfectedNZ?
Hey, Aotearoa. It’s time we had a chat about infectious diseases and what we’re going to do about the looming antimicrobial armageddon. That’s why we’ve asked leading health, social and economic researchers, and people with personal stories, to help us get real about our vulnerability and discuss solutions. Follow their blogs right here at tepunhahamatatini.ac.nz and watch the conversation spread across social media with #infectedNZ.
Backing it all up, wherever possible, is data from the good folk at Figure.NZ. Their super duper charts are based on data sourced from public repositories, government departments, academics and corporations. Check out their #infectedNZ data board and sign-up to create your very own data board on any topic that floats your boat.

Antibiotics – invented by fungi, harnessed by humans
The fungi are a vast and distinctive kingdom of organisms that make up a significant component of most land ecosystems, intimately linked with bacteria, plants, and animals. Fungi cannot make their own food, so they live on or within their food, be that dead wood or leaves, overmature fruit, or a living plant or animal. In these habitats, a fungus competes with other life forms including other fungi and also bacteria. Some species of fungi have adapted to growth in hostile habitats, while others developed biochemical defences to fight off competitors. The awareness and application of these fungal defences has revolutionised modern medicine.
The idea that a substance could be used as a ‘magic bullet’ to target disease causing organisms dates from the late 19th Century. In 1909 Nobel prize winner Paul Ehrlich and his team effectively began the science of drug discovery when they developed the organic arsenic compound Salvarsan to treat syphilis. But it wasn’t until the chance discovery of antibacterial action by fungi that antibiotics became one of humanity’s major medical advances.
Alexander Fleming is credited with the discovery and naming of penicillin. In 1928 he returned from holiday to St Mary’s Hospital, London, to find previously living cultures of the bacterium Staphylococcus aureus contaminated and killed by a mould fungus Penicillium notatum. Fleming kept the fungal culture but wasn’t able to purify and stabilise penicillin. This achievement was left to Florey, Chain & Heatley at Oxford University. Subsequent researchers in the UK and USA perfected the production by fermentation and later chemical synthesis, enabling a revolution in medical intervention to counter previously lethal conditions such as pneumonia, septicaemia, and gangrene. Before antibiotics, bacterial infection of a skin wound often led to growth of bacteria that overwhelmed the body’s immune system. In World War 1, for example, more than 1 in 10 soldiers injured in battle died of infected wounds.
The life-saving success of penicillin led to intensive research, especially until 1970, to discover new antimicrobial compounds produced by fungi and filamentous bacteria. This gave us antibiotics such as cephalosporin produced from Cephalosporium; neomycin, tetracycline and streptomycin (to initially control tuberculosis (TB)) from Streptomyces (Actinobacteria), and antifungals such as griseofulvin from Penicillium griseofulvin.
Since 1970, there have been very few new types of antibiotics discovered. At the same time, disease-causing bacteria have evolved to become resistant to our medicines, making currently available antibiotics less and less effective. Even worse, bacteria evolve antibiotic resistance much faster than the pace of new antibiotic discovery. Unfortunately, the major pharmaceutical companies have diverted research funds to more profitable drug development for chronic diseases rather than for bacterial infections. There’s an urgent need to develop new responses to overcome antibiotic-resistant superbugs, and so avoid a return to pre-penicillin days when an infected cut could be lethal.
This has been the motivation for a number of new research initiatives seeking novel antibiotics and other means to control bacterial infection. New Zealand’s national living culture collection of fungi and plant-associated bacteria is a research resource for national benefit, managed by Landcare Research. Bevan Weir, as Curator of the International Collection of Microorganisms from Plants (ICMP), is collaborating with Siouxsie Wiles and her University of Auckland postgraduate students seeking new antibiotic compounds from among the 20,000 cultures of fungi and bacteria. The New Zealand collection began in the 1950s, and includes many native species that have not previously been investigated for antibiotic production.
References
Livermore DM 2011. Discovery research: the scientific challenge of finding new antibiotics. J. Antimicrob. Chemother. 66: 1941–1944.
Moore D, Robson GD, Trinci PJ 2011. 21st Century Guidebook to Fungi. Cambridge University Press, Cambridge.
Overbye KM, Barrett JF 2005. Antibiotics: where did we go wrong? Drug Discovery Today 10: 45-52.
About
Peter Buchanan works for Landcare Research as Science Team Leader for a group of 30 science staff researching New Zealand’s most diverse groups of terrestrial organisms – the fungi, bacteria, invertebrates, and plants. Landcare Research is custodian of five national biological collections including the NZ Fungal Collection (PDD) and Culture Collection of Fungi and Bacteria (ICMP). Peter’s research interests are in fungal conservation, wood decay fungi, applied uses of fungi, and science education.
What is InfectedNZ?
Hey, Aotearoa. It’s time we had a chat about infectious diseases and what we’re going to do about the looming antimicrobial armageddon. That’s why we’ve asked leading health, social and economic researchers, and people with personal stories, to help us get real about our vulnerability and discuss solutions. Follow their blogs right here at tepunhahamatatini.ac.nz and watch the conversation spread across social media with #infectedNZ.
Backing it all up, wherever possible, is data from the good folk at Figure.NZ. Their super duper charts are based on data sourced from public repositories, government departments, academics and corporations. Check out their #infectedNZ data board and sign-up to create your very own data board on any topic that floats your boat.

Antimicrobial use in animals: where do we stand?
One thing is clearer than ever: the wellbeing of animals, humans and the environment is inseparable and, on a global scale, no issue represents this complex relationship better than the rise of antimicrobial resistance.
The medical discovery that revolutionised our ability to treat disease in humans and animals is becoming its own worst enemy. The pressure is on the veterinary and medical communities internationally to find solutions. It’s a ‘One Health’ issue in its purest form.
Last year the New Zealand Veterinary Association (NZVA) tackled the issue of antimicrobial resistance (AMR) head-on. It challenged the veterinary profession, farmers, pet owners, government and industry to rethink the use of antibiotics for animals. It set an aspirational vision that “by 2030 New Zealand Inc. will not need antibiotics for the maintenance of animal health and wellness”.
It’s a big ask, and not necessarily a vision that everyone immediately supports. It’s also a carefully worded statement acknowledging that while the science is complex and sometimes contradictory, everyone in essence agrees that the more we use these valuable medicines, the more likely resistance will be selected for. It also acknowledges that the issue the veterinary profession must address most urgently is to reduce, refine, and replace the use of antimicrobials for maintenance (prophylactic and metaphylactic use) while maintaining their therapeutic use to protect the wellbeing of our animals.
The science of AMR is challenging, challenged, and still emerging, which means the issue is poorly understood by most people. What is poorly understood by even the scientific community is that, when measured against the estimated biomass of animals in the country, New Zealand is already the third lowest user of antibiotics for animals in the OECD.
Moreover, data published this year showed that while the average use of antibiotics in animals is 9.4mg active ingredient/kg biomass, the human use is 121mg active ingredient/kg biomass, 12.9 times higher and the 16th highest of the countries compared. This is a simple indicator of comparative use in what we all acknowledge to be a scientifically complex issue (we must, for example, also consider the critically important nature of the actives used in veterinary medicine and that many of these actives are for veterinary use only), but it reflects how effective regulation and control by veterinarians over prescribing practices is maintaining New Zealand in a position of world leadership in the stewardship of these vital medicines.
Dr Stephen Page, an internationally recognised veterinary pharmacologist, has proposed that the previous Hypercene era of profligate antimicrobial use is moving in to the Hypocene, era of over restraint. This is an inevitable step, he says, before the human and veterinary professions reach the Eucene, the era of appropriate use.
This may well be. In order to navigate to the Eucene, we must ensure that scientific evidence is used as the basis of any regulatory or stewardship changes made to address society’s growing concerns around antimicrobial usage. We must also ensure that access to these vital medicines is maintained to responsibly treat bacterial disease, for the wellbeing of animals, humans, and the environment.
Reference
Hillerton JE, Irvine CR, Bryan MA, Scott D, Merchant SC (2016). Use of antimicrobials for animals in New Zealand, and in comparison with other countries. New Zealand Veterinary Journal, Forthcoming articles, pp 1-7, Mar 2016.
About
Callum Irvine is an experienced vet and the Head of Veterinary Services for the New Zealand Veterinary Association (NZVA) where he champions veterinary leadership and advocates on behalf of the veterinary profession. Through his role he promotes science based policy development across all areas of veterinary science.
What is InfectedNZ?
Hey, Aotearoa. It’s time we had a chat about infectious diseases and what we’re going to do about the looming antimicrobial armageddon. That’s why we’ve asked leading health, social and economic researchers, and people with personal stories, to help us get real about our vulnerability and discuss solutions. Follow their blogs right here at tepunhahamatatini.ac.nz and watch the conversation spread across social media with #infectedNZ.
Backing it all up, wherever possible, is data from the good folk at Figure.NZ. Their super duper charts are based on data sourced from public repositories, government departments, academics and corporations. Check out their #infectedNZ data board and sign-up to create your very own data board on any topic that floats your boat.

Dolphins and infectious diseases: a story of toxoplasmosis
Toxoplasmosis is an infectious disease caused by parasite, Toxoplasma gondii. It is an important cause of disease in a wide range of species, including humans, domestic animals and wildlife species.
Cats are the only known source of the infectious stage (the oocyst) of the parasite, and can shed millions of these microscopic cysts in their faeces. Oocysts are extremely resistant in the environment, and infect a new host when they are accidentally swallowed in food or water that has been contaminated by cat faeces.
After they’ve been ingested, oocysts can spread throughout the body in the blood stream, causing clinical disease, or encyst and become latent in body tissues. As well as accidental ingestion, hosts can also be infected by eating encysted Toxoplasma organisms in tissues of prey or food items, or by transfer across the placenta to a fetus when a pregnant host becomes infected.
In humans, disease can be either mild and flu-like, or more severe and debilitating, especially in newborn children and in patients who are immunosuppressed. Some recent studies have also suggested a link between Toxoplasma infection and psychiatric disorders.
For many years toxoplasmosis was considered to be mainly a terrestrial disease, but more recently increasing numbers of water-borne infections have been recognised. Human infections have occurred overseas following contamination of water sources with faeces from wild large cats, and in several countries coastal marine mammals such as sea otters have been found to be infected.
Our research group is contracted by the Department of Conservation to investigate deaths in several marine mammal species, and between 2007 and 2016 we diagnosed fatal toxoplasmosis in eight endangered New Zealand Hector’s dolphins, including two critically endangered Maui dolphins. All of these infections were caused by a specific strain (genotype) of Toxoplasma, which appears to be identical to a genotype we have found in wild birds.
We believe that oocysts reach the New Zealand coast in freshwater runoff contaminated by cat faeces. The genotype we have found in dolphins and birds could be either extremely common in this country, or cause particularly severe infections in these species. To investigate this disease further we are conducting a series of studies looking at the frequency of infection and the genotypes present in domestic and feral cats in different parts of New Zealand, and possible transmission pathways for oocyst contamination of waterways. We are particularly interested in identifying risk factors for contamination of the marine environment, including high volumes of rainfall and proximity to urban settlements or large cat populations.
Toxoplasmosis isn’t the only infectious disease that we’ve found in Hector’s dolphins. One of the biggest impacts on the species is believed to be accidental capture in fishing nets, but our work at Massey shows that disease is an additional factor contributing to Hector’s dolphin deaths.
In one of our studies, 13/49 (27%) of the dolphins examined had died due to an infectious disease, either bacterial, fungal or parasitic. We’ve made similar findings in investigations of New Zealand sea lion deaths.
While it appears as though infectious disease is on the increase in our marine mammals, it is difficult to be absolutely sure about this, since our ability to diagnose these infections has also improved over the years.
Our findings show how important it is to investigate infectious disease in wildlife species, including going back to re-examine stored samples using newer techniques. As we continue to do this we will begin to build a better picture of the impacts we are having on our natural world, and the effects these changes will have on our own health and that of our environment.
About
Dr Wendi Roe is a veterinary pathologist and marine mammal researcher based at Wildbase, in the Veterinary School at Massey University, Palmerston North.
She began her veterinary career with 10 years in “normal” practice, working with cats, dogs, and farm species, before going back to university in 2000 to train in pathology and work with marine mammals. Current research carried out by Wendi and her group focusses on causes of disease and death in endangered New Zealand marine mammals.
Find out more about toxoplasmosis in a blog by Siouxsie Wiles.
What is InfectedNZ?
Hey, Aotearoa. It’s time we had a chat about infectious diseases and what we’re going to do about the looming antimicrobial armageddon. That’s why we’ve asked leading health, social and economic researchers, and people with personal stories, to help us get real about our vulnerability and discuss solutions. Follow their blogs right here at tepunhahamatatini.ac.nz and watch the conversation spread across social media with #infectedNZ.
Backing it all up, wherever possible, is data from the good folk at Figure.NZ. Their super duper charts are based on data sourced from public repositories, government departments, academics and corporations. Check out their #infectedNZ data board and sign-up to create your very own data board on any topic that floats your boat.

If only there had been a vaccine
“Only clean water and antibiotics have had an impact on childhood death and disease that is equal to that of vaccines” – World Health Organization (WHO).
In the 20th century, when most of you reading this were born, nearly 1.7 billion people died from infectious diseases.
Most of the diseases in this sobering infographic are now vaccine preventable through the creative collective brilliance of many scientists. Smallpox, influenza, diarrhoea (rotavirus), whooping cough, meningitis, tetanus, Hepatitis B, rabies, and measles are the diseases responsible for carrying off most of those 1.7 billion people.
While the First World War raged for over four years and took the lives of 16,697 New Zealanders, in 1918 influenza took about half as many in the space of just two months (8600 New Zealanders died).
So how many lives have vaccines saved? I have never been able to find an overall total, but one bunch of scientists (ScienceHeros.com) estimate that Edward Jenner alone was responsible for saving 530 million lives. In other words, that is how many deaths from smallpox are estimated to have been prevented. I thought that sounded like a lot before I remembered that the estimate for the 20th century alone is about 300-500 million so maybe this is actually a conservative estimate although I have not been able to find any convincing estimates on this. Imagine inventing something that saved half a billion lives!
That made me think of another major killer – measles.
Already this century the WHO has estimated that measles vaccine alone has saved over 17 million lives. A couple of doses at a cost of about $NZ1 works a treat. And if you think measles never really hurt any Kiwis then I suggest you have a look at this New Zealand timeline and contemplate how small the population was during these years. In 1900 we numbered little more than 700,000
The man responsible for this impressive achievement is Maurice Hilleman who developed a measles vaccine which is estimated to have saved 118 million lives since the 1960s. Every country in the world uses measles vaccine and the disease is on track for global elimination. That is one hell of a legacy, but Hilleman didn’t finish there. He developed over 40 vaccines including those against influenza, mumps, hepatitis A and B, chickenpox, meningococcal, and Haemophilus influenza type B, How many more lives do these account for?
The infectious landscape in NZ is very different today than it was. Once upon a time, before air travel, if someone infectious got on a boat they had either died or recovered by the time they arrived here some 135 days later. New Zealand’s isolation made her a natural quarantine zone.
But in the end this did not stop the importation of infectious diseases and as more people came so did their diseases. The first documented outbreak of a now vaccine preventable disease was an influenza outbreak in 1817-20. From then on epidemics occurred regularly, decimating family sizes and disproportionality affecting Māori to the point where the population had halved by the late 1800s.
If one examines the chronology of events major enough to affect the health and size and life expectancy of the New Zealand population since 1850, it is striking how many of these are either infectious epidemics (negative effect) or the introduction of a vaccine (positive effect). (Editor’s note: the Statistics New Zealand website may be down due to 14 November earthquake).
The chronology starts with an influenza epidemic in 1852-3. In 1873 there was a notable pertussis epidemic with 356 deaths noted and the very next year a measles epidemic taking 344 children along with diphtheria killing 481 in the same year. These four diseases go on to appear as major events every few years. Today they are all preventable but still not curable.
Watch: Everything you want to know about immunisation but were afraid to ask.
A timeline of epidemics affecting New Zealand shows almost all of the most dangerous diseases (those that carried off the most people) are now be vaccine preventable. These diseases in order of first appearance in NZ were:
- 1817 Influenza
- 1835 Measles
- 1863 Scarlet fever, aka strep throat
- 1872 Diphtheria
- 1872 Smallpox (only the once in 1872)
- 1873 Pertussis
- 1874 Typhoid
- 1875 TB
- 1900 Plague
- 1916 Polio
- 1921 Meningitis (probably meningococcal disease)
- 1939 Rubella
- 1971 Hepatitis A
- 1983 HIV/AIDS
- 1997 Campylobacteriosis
- 2009 H1N1 swine flu
Most of these (with the exception of smallpox) caused repeated epidemics every 3 – 5 years until their respective vaccines were introduced. The bold ones are vaccine preventable to a greater or lesser extent.
While New Zealand never really suffered from smallpox, in part thanks to isolation, it was not until the introduction of the first national immunisation programme that sickness and death from these infectious stopped.
Enter vaccination
In 1926 the first vaccine was introduced into New Zealand. Diphtheria vaccine became available to schools and orphanages, but it was not until 1941 that it became routine for all children under seven years old. Below is what happened next:

Number of cases of diphtheria and diphtheria mortality, 1916–2013. Source: Ministry of Health and the Institute of Environmental Science and Research.
The next cab off the vaccine rank to be introduced into New Zealand was Tetanus after 1940, however it was not until 1958 this became routine.
At this time we also began vaccinating against pertussis and the mortality rate plunged.

Numbers of cases of poliomyelitis, 1915–2013. Source: Ministry of Health and the Institute of Environmental Science and Research
Polio vaccine arrived in 1956 and shortly after the disease was eliminated in New Zealand.
Today
We have controlled these diseases through an effective immunisation programme which now reaches more of New Zealand’s children than ever before. In 1991 only about 56% of New Zealand children were fully vaccinated. This was a national shame, second from the bottom of all the OECD countries. Today we are awesome with around 94% of New Zealand children fully vaccinated against 11 diseases, soon to be 12. This puts us near the top of the OECD countries.
Twelve diseases we protect NZ children against before they are two years of age are:
- Diphtheria
- Tetanus
- Pertussis
- Polio
- Haemophilus influenza type B (a cause of meningitis)
- Hepatitis B
- Measles
- Mumps
- Rubella
- Pneumococcal disease
- Rotavirus
- Varicella (chickenpox) from 2017

Data for graphs are based on frequency of epidemics noted in the NZ historical records and the number of deaths noted in epidemics. The number of cases has been extrapolated by the estimates of mortality in the pre-vaccine era (JAMA 2007;298(18):2155-2163)
But
In New Zealand, vaccines have not been universally embraced. People have forgotten what these diseases are and what they did to families.
Today myths about vaccines circulate widely on social media where opponents actively seek to discredit the vaccination programme. While falsehood flies around the world on Twitter in one second the truth can have a hard time catching up, and by then the damage has been done. Confidence in life-saving vaccines has been shattered through deceit.
The evolution of a vaccine programme is predicable. The Chen graph below may be old now, but it sums up the evolution of vaccine programmes beautifully. First there is disease. A vaccine comes along and the disease declines. People start freaking out about (usually perceived not real) adverse events and lose confidence in the vaccine. Coverage declines, disease comes back. People realise disease is bad and they should never have stopped vaccinating, coverage improves. Disease declines again.
I wonder what the families who watched their children die from these diseases would think about those that actively seek to prevent people immunising their children? An opportunity they never had.
Vaccines have changed people’s perception of what a normal life expectancy is. Today the single biggest threat to preventing these, and many more diseases, is a lack of commitment to and a lack of confidence in vaccines. Many people perceive vaccines to carry a much greater risk than they do. Despite the fact that vaccines are one of the safest public health interventions ever developed this is not always the perception.
Check out more data about vaccines and hospitalisations from the Figure.NZ team:
https://figure.nz/@InfectedNZ/public
https://figure.nz/chart/AzwxPvVYJbh0lrcY-ss9cb1hXRe2y2C4x
https://figure.nz/chart/bn2ytKLMXjW0wUIk
About
Helen Petousis-Harris is a vaccinologist. Her background is predominantly biological sciences, and she did her PhD in vaccinology. She has an appointment as a Senior Lecturer in the Department of General Practice and Primary Health Care at the University of Auckland’s Faculty of Medicine and Health Sciences. She and has worked at the Immunisation Advisory Centre at the University of Auckland since 1998 where she has developed a passion for all things vaccine. Current favourite diseases are pertussis, pneumococcal disease, measles, meningococcal, HPV and gonorrhoea. Could be persuaded to turn attention to shingles.
What is InfectedNZ?
Hey, Aotearoa. It’s time we had a chat about infectious diseases and what we’re going to do about the looming antimicrobial armageddon. That’s why we’ve asked leading health, social and economic researchers, and people with personal stories, to help us get real about our vulnerability and discuss solutions. Follow their blogs right here at tepunhahamatatini.ac.nz and watch the conversation spread across social media with #infectedNZ.
Backing it all up, wherever possible, is data from the good folk at Figure.NZ. Their super duper charts are based on data sourced from public repositories, government departments, academics and corporations. Check out their #infectedNZ data board and sign-up to create your very own data board on any topic that floats your boat.

‘Gross us out Miss’: talking about chlamydia and other STIs with young people
Chlamydia is not a very sexy topic… it should be though, because it’s caught by having sex. It’s surprising how many young people don’t know how common chlamydia is. It’s easy to treat but it’s so much easier to prevent by using condoms when having oral, anal, or vaginal sex.
I’m a Nurse Practitioner for children and young people and also a Senior Lecturer at the University of Auckland. I work in a general practice clinic where we also provide health services for young people by going into three high schools.
Recently I’ve been asking young people about the best way to get information about STIs out to their age group. Chlamydia is a big problem for young people in New Zealand. In 2013 we tested 246 people between 15 and 18 years old who were seeking sexual health care for chlamydia. We found that 36% were positive. What people don’t realise is that chlamydia rarely causes any unpleasant symptoms, but it can have a lifelong consequence of infertility. So when you want to have a baby you can’t because your tubes (both male and female) are clogged up from past chlamydia infections.
Chlamydia is most commonly found in young people aged 15 – 29 years. Young women have higher rates than young men, but that may be due to women getting tested more frequently. What is most concerning is that young Māori women have rates 2-3 times higher than NZ Europeans.
“Social media like on Facebook, Instagram, Twitter and stuff” would be the best way to spread the word, said one group of 16 – 18 year old girls I asked (amidst chatter about whether you could get pregnant if you were the girl on top).
“You should start a movement or like have a campaign,” was another suggestion. They also said that they should be more educated about it and that it should be compulsory for Years 9 to 13. “They do it in intermediate [learn about sexual health] but that’s when they’re like really immature and they don’t listen.”
When asked what would help them learn about STIs, the girls thought that they should be “grossed out as much as you can” by showing them horrible pictures of infections and by getting testimonials from people who’ve had an STI. Scare tactics work, they said, because people don’t believe it will happen to them. “Come to the schools and talk to us in assemblies and put posters up with pictures, not heaps and heaps of words,” were a couple of suggestions. “Get on to Facebook to start a campaign like #saynotochlamydia or #chlamydiaisnotourfuture.”
“Could you handle being grossed out by pictures [of STIs]?” I asked a group of 16 – 18 year old boys. “Yeah, if they see pictures and realise they may have it, they’d wanna get a check up.” There was a suggestion that it could be featured in Shortland Street, depicting ordinary people getting an STI. “You should get someone who’s had chlamydia to talk about it,” said one boy. In this group we then went on to talk about the symptoms you might get if you had an STI, closely followed by the different sizes, shapes, colours and flavours of condoms that a boy called Kevin [pseudonym] had.
As a country we ratified a Treaty called the United Nations Convention on the Rights of the Child (UNCRC) back in 1993. Article 12 of the UNCRC states that children have the right to an opinion in all matters that affect them. As we know that chlamydia predominantly infects children and young people, they should have a say in how they are taught about the issue. My sessions with young people talking about STIs both individually and in groups have always been informative and very helpful from a health professional perspective. I often quote the saying from Phillip McMillan Bowse who was a contributor to England’s Eden project: “If you want to achieve the impossible – give it to the young, because they don’t know it can’t be done.”
About
Dr Karen Hoare is a Nurse Practitioner for children and young people and also a Senior Lecturer at the University of Auckland.
What is InfectedNZ?
Hey, Aotearoa. It’s time we had a chat about infectious diseases and what we’re going to do about the looming antimicrobial armageddon. That’s why we’ve asked leading health, social and economic researchers, and people with personal stories, to help us get real about our vulnerability and discuss solutions. Follow their blogs right here at tepunhahamatatini.ac.nz and watch the conversation spread across social media with #infectedNZ.
Backing it all up, wherever possible, is data from the good folk at Figure.NZ. Their super duper charts are based on data sourced from public repositories, government departments, academics and corporations. Check out their #infectedNZ data board and sign-up to create your very own data board on any topic that floats your boat.

Healthy Homes Project
My name is Nick Pattison and I would like to share with you a citizen science investigation that I was involved in with my previous school Rongomai Primary, called the Healthy Homes Project. The project was created out of conversations between myself and other community members in Otara about the state of local housing in South Auckland, and was magnified at the time by the death of a two-year-old girl in Otara with poor health conditions linked to her damp state home. Something needed to be done.

Dr. Peter Buchanan and students at Landcare Research. Photo taken by Nick Pattison.
I contacted COMET for support and they provided a wonderful project manager, Dr. Sarah Morgan who helped run the project. She contacted local high schools to see if any would be interested in collaborating with us to have students test their homes to investigate the types and amounts of mould. Nicole Stevens from Manurewa High agreed to use her health academy, and at that time there had been no data gathered on South Auckland homes.
The project kicked off with a visit to the local Landcare Research facility, where my students met with researchers to learn how to collect test swab samples and to analyse them for the presence of mould. They then co-designed the method of the investigation. The project included really cool aspects of science – mycology (the study of fungi), modern genetic sequencing, and using microscopes and lab equipment not available in schools. Each student went home after this training and lab induction session and took swab samples from their bedrooms, the living room, the kitchen, and two other rooms of their choice.
The key results from the project
- 18 out of 22 homes were mouldy, and all had the right temperature and humidity to grow mould;
- the mould was readily recovered in a form that was likely to cause harm;
- three different yeasts described as “emerging human pathogens” were found;
- bacteria recovered from some of the homes was resistant to antibiotics; and
- Landcare Research says the homes with the yeasts and the antibiotic-resistant bacteria will need further investigation.
Landcare Research, which helped analyse the samples from the homes of 22 students, did not expect some of the results. Plant pathologist Dr Stanley Bellgard helped the students with their project, Nirvana Healthcare sponsored the project by giving them swabs, and SouthSci funding, which is the South Auckland pilot of the Participatory Science Platform, an initiative under Curious Minds, allowed us to purchase tools called an ibutton to measure temperature and humidity, and produce communication material to share our work.
In the houses, the mould spores were actively in the air and these are the things that we inhale. Mostly it’s not an issue because we are healthy and our wellbeing is intact and these moulds generally don’t have an impact on us. But if we are mentally stressed, physiologically stressed, malnourished or suffering dehydration, or have some predisposition to disease, then these moulds can induce a downward spiral of health.
Fourteen different kinds of mould were found across 18 of the 22 houses the students lived in, but when we looked at some of the yeasts we recovered, they really surprised us because we found three different yeasts that were emerging human pathogens.
Finding yeasts in the study had not been considered but they did have the potential to cause harm. Mr Bellgard said these yeasts, which included Candida parapsilosis and Rhodotorula, were linked to ill-health when combined with other complications, but there was another big surprise to come. We recovered three bacteria that had antibacterial resistance. This was also quite a surprising find beyond the yeast being a threat to health. These antibiotic resistant bacteria can be really, really challenging, especially in a hospital environment.
We deliberately did not look at whether the homes were private or state houses as we’re not trying to stereotype any group within our community and anonymity in scientific research for personal safety is very important. We just want to look at all homes to make sure they are healthy. We wanted the results to be anonymous, so no one could be targeted as having a ‘dirty’ or ‘unhealthy’ home.
The study also revealed the coldest home a student lived in – as measured on a September day at 6am – was 12°C. According to the Asthma Foundation, there is an increased risk of respiratory disease when homes fall below 16°C. The highest humidity recorded was 85 percent.

Rongomai Primary student Junior Wilson. Photo: RNZ / Kim Baker Wilson.
One of my students from Rongomai, Junior Wilson, aged 11, unveiled some of the findings on stage at a Manurewa High School prizegiving. Afterwards he gave interviews for RadioNZ, New Zealand Herald, Stuff, and Manukau Courier amongst others. Since the investigation we were successful in obtaining an Unlocking Curious Minds grant to work with Manurewa High, Landcare Research, and Otago University to investigate the amount of dust mites in homes as this acts as a more reliable model for the health condition of homes.
About
Nick Pattison is the Director of STEM Kauri Flats
What is InfectedNZ?
Hey, Aotearoa. It’s time we had a chat about infectious diseases and what we’re going to do about the looming antimicrobial armageddon. That’s why we’ve asked leading health, social and economic researchers, and people with personal stories, to help us get real about our vulnerability and discuss solutions. Follow their blogs right here at tepunhahamatatini.ac.nz and watch the conversation spread across social media with #infectedNZ.
Backing it all up, wherever possible, is data from the good folk at Figure.NZ. Their super duper charts are based on data sourced from public repositories, government departments, academics and corporations. Check out their #infectedNZ data board and sign-up to create your very own data board on any topic that floats your boat.

The two faces of infectious disease threats: we need to respond to both
Infectious diseases are far from defeated. They pose a unique health threat because they are caused by living micro-organisms. This biological fact has two important consequences: firstly it means that these micro-organisms are constantly evolving to exploit new ecological opportunities, and secondly they are transmissible (they spread from person-to-person and from infected animals and contaminated environments).
The constant evolution of micro-organisms is one of the drivers of emerging infectious diseases. There are more than 1400 species of infectious organism known to cause disease in humans [1]. New emerging infectious diseases most commonly arise from infections in animals [1]. These organisms are also evolving in other ways, including the development of antimicrobial resistance [2]. The net effect is a constantly changing set of emerging infectious diseases which often need an urgent public health response that has to be adapted to the characteristics of each new threat.
The transmissible nature of infectious diseases also creates many features that distinguish them from non-communicable diseases (NCDs). An infectious disease case can become the exposure for other potential cases, which is not the situation for NCDs such as cancer and heart disease. This transmission risk creates the need for specialised infection control staff in healthcare institutions. On the positive side, infectious diseases can sometimes be eradicated as a human health hazard if transmission can be stopped, as has occurred with smallpox and will hopefully occur with poliomyelitis and other pathogens in the future [3].
The two faces of infectious diseases
The unique features of infectious diseases mean that they manifest two distinct patterns of disease threats.
The first face of infectious diseases is their appearance as a seemingly endless series of new threats that surprise and sometimes terrify us. The most frightening manifestations are pandemics which, by definition, are epidemics that spread to affect multiple geographic regions. These may take the form of new epidemics of known pathogens such as pandemic influenza H1N1, Ebola and Zika, or previously unknown pathogens such as SARS and MERS [4]. Far more common are local epidemics of familiar diseases, which result in several hundred reported outbreaks each year in New Zealand [5].
The second face of infectious diseases is the one that gets less attention, but ultimately accounts for far more human disease and premature death. This is the ongoing impact of established endemic pathogens. Infectious diseases remain the commonest cause of hospitalisation in NZ, accounting for 27% of acute and arranged admissions [6]. The main categories are respiratory, skin and gastrointestinal infections. The highest rates of these infections are in the most vulnerable populations, particularly the young and elderly. They also show a marked social gradient with higher rates among Māori and Pasifika and households living in more deprived neighbourhoods [6].
Responding to infectious disease threats
An effective response to infectious diseases requires us to manage their two faces: the emerging hazards and the ongoing established threats to the health of vulnerable populations.
Our capacity to manage emerging infectious disease threats is difficult to fully access until it is tested, though simulation exercises can help. New Zealand has multiple recognised outbreaks each year reported via its national outbreak recording system. Most are relatively small, well-contained food and water borne outbreaks [5]. An exception was the recent Havelock North campylobacteriosis outbreak which was remarkable in terms of its size (estimated at 5,200 cases). This event reminded us of our vulnerability to drinking water contamination and the need to consider increasing pressures on our environment, notably the impact of climate change and intensification of animal-based agriculture [7]. The Havelock North outbreak comes in the context of a much larger, prolonged epidemic increase in campylobacteriosis caused by rising production and consumptions of contaminated fresh poultry meat [8].
A major advance in managing globally important emerging infectious diseases has come from the International Health Regulations 2005. This agreement requires all WHO member states to assess and report emerging infectious diseases that have potential to develop into public health emergencies of international concern (known as PHEIC) [9]. Since the regulations came into force there have been four such emergencies: pandemic influenza H1N1 in 2009, polio in 2014, Ebola in 2014, and Zika in 2016. Of these, only pandemic influenza spread to NZ, though its impact was comparable to normal seasonal influenza [10].
The Ebola pandemic in West Africa was a grim reminder of the need for a more proactive approach to managing emerging infectious diseases. There is now growing support for the Global Health Security Agenda which is placing more emphasis on prevention and ensuring adequate health services for people living in low and middle-income countries [11].
Given the dynamic nature of emerging infectious diseases, New Zealand needs to constantly review and refine its response capacity. We have not been good at documenting lessons from major epidemics and pandemics in the past [12]. The Independent Inquiry into the Havelock North campylobacteriosis outbreak is therefore a welcome opportunity to identify and act on the lessons learned from such events [7].
In terms of the second face of infectious diseases, there is considerable evidence that New Zealand has performed poorly in recent times. We have a history of increasing rates of hospitalisation for serious infectious diseases, particularly during the 1990s. We also have very high levels of inequality in rates of infectious diseases generally, particularly across ethnic and socioeconomic groups [6]. The most extreme example is rheumatic fever where Māori and Pasifika are 14 to 21 times more likely to develop the disease compared to other New Zealanders [13].
Addressing New Zealand’s high rates of serious infectious diseases of poverty is a major challenge. This situation requires a highly strategic approach with engagement from multiple Government agencies. An effective response includes achieving high coverage with vaccines and other interventions targeting specific infections like pneumococcal disease and rheumatic fever. Ultimately, the biggest gains depend on improving major health determinants, such as housing [14] and access to healthcare, and reducing child poverty [15].
Fundamental to all of these measures is having the infrastructure to develop and sustain the policies and programmes needed to manage both the epidemic and established faces of infectious diseases. This infrastructure requires a high level of multi-sectoral coordination, effective multidisciplinary networks including One Health [16], and good linkages to international prevention and control initiatives. This capacity needs to be supported by highly developed surveillance systems, a skilled workforce (including infectious disease specialists, microbiologists and veterinarians), and a vigorous programme of operational research to keep ahead of these infectious disease threats. Increasing levels of antimicrobial resistance will provide an important test of New Zealand’s ability to mount an effective response to a serious emerging infectious disease problem [17].
Conclusion
Infectious diseases are a unique threat to human health and wellbeing. We know a lot about how to manage this challenge but are not necessarily acting on this knowledge. Important gaps include the need to address diseases of poverty and the need to keep investing in surveillance and coordinated response capacity that can detect and manage emerging diseases and pandemics.
About
Michael Baker is a public health medicine specialist and professor of public health at the University of Otago, Wellington. He is Director of the University’s Health Environment Infection Research Unit (HEIRU), Co-director of He Kainga Oranga / Housing and Health Research Programme, and Chief Investigator at the Australian Centre for Research Excellence on Integrated Systems for Epidemic Response (ISER).
What is InfectedNZ?
Hey, Aotearoa. It’s time we had a chat about infectious diseases and what we’re going to do about the looming antimicrobial armageddon. That’s why we’ve asked leading health, social and economic researchers, and people with personal stories, to help us get real about our vulnerability and discuss solutions. Follow their blogs right here at tepunhahamatatini.ac.nz and watch the conversation spread across social media with #infectedNZ.
Backing it all up, wherever possible, is data from the good folk at Figure.NZ. Their super duper charts are based on data sourced from public repositories, government departments, academics and corporations. Check out their #infectedNZ data board and sign-up to create your very own data board on any topic that floats your boat.
References
- Taylor LH, Latham SM, Woolhouse ME: Risk factors for human disease emergence. Philosophical transactions of the Royal Society of London Series B, Biological sciences 2001, 356(1411):983-989.
- Williamson DA, Heffernan H: The changing landscape of antimicrobial resistance in New Zealand. N Z Med J 2014, 127(1403):41-54.
- Centers for Disease C, Prevention: Global Disease Elimination and Eradication as Public Health Strategies. Proceedings of a conference. Atlanta, Georgia, USA. 23-25 February 1998. MMWR supplements 1999, 48:1-208.
- de Wit E, van Doremalen N, Falzarano D, Munster VJ: SARS and MERS: recent insights into emerging coronaviruses. Nature reviews Microbiology 2016, 14(8):523-534.
- The Institute of Environmental Science and Research Ltd: Notifiable Diseases in New Zealand: Annual Report 2014. In. Porirua, New Zealand The Institute of Environmental Science and Research Ltd.; 2015.
- Baker MG, Telfar Barnard L, Kvalsvig A, Verrall A, Zhang J, Keall M, Wilson N, Wall T, Howden-Chapman P: Increasing incidence of serious infectious diseases and inequalities in New Zealand: a national epidemiological study. Lancet 2012, 379(9821):1112-1119.
- Woodward A, Hales S: Note to the Havelock North Inquiry – Think Big. In: Public Health Expert Blog, https://blogsotagoacnz/pubhealthexpert/2016/09/26/note-to-the-havelock-north-inquiry-think-big/. 2016.
- Baker M, Wilson N: NZ’s long-running Campylobacter epidemic from poultry: Now with antibiotic resistance. In: Public Health Expert Blog, https://blogsotagoacnz/pubhealthexpert/2015/12/19/nzs-long-running-campylobacter-epidemic-from-poultry-now-with-antibiotic-resistance/. 2015.
- Baker MG, Fidler DP: Global public health surveillance under new international health regulations. Emerg Infect Dis 2006, 12(7):1058-1065.
- Baker MG, Wilson N, Huang QS, Paine S, Lopez L, Bandaranayake D, Tobias M, Mason K, Mackereth GF, Jacobs M et al: Pandemic influenza A(H1N1)v in New Zealand: the experience from April to August 2009. Euro Surveill 2009, 14(34):pii=19319.
- Heymann DL, Chen L, Takemi K, Fidler DP, Tappero JW, Thomas MJ, Kenyon TA, Frieden TR, Yach D, Nishtar S et al: Global health security: the wider lessons from the west African Ebola virus disease epidemic. Lancet 2015, 385(9980):1884-1901.
- Wilson N, Summers JA, Baker MG: The 2009 influenza pandemic: a review of the strengths and weaknesses of the health sector response in New Zealand. N Z Med J 2012, 125(1365):54-66.
- Gurney JK, Stanley J, Baker MG, Wilson NJ, Sarfati D: Estimating the risk of acute rheumatic fever in New Zealand by age, ethnicity and deprivation. Epidemiol Infect 2016:1-10.
- Howden-Chapman P: Home Truths: Confronting New Zealand’s Housing Crisis. Wellington: Bridget Williams Books; 2015.
- Boston J, Chapple S: Child poverty in New Zealand. Wellington: Bridget Williams Books; 2014.
- Gibbs EP: The evolution of One Health: a decade of progress and challenges for the future. The Veterinary record 2014, 174(4):85-91.
- Pullon HW, Gommans J, Thomas MG, Metcalf S, Grainger R, Wild H: Antimicrobial resistance in New Zealand: the evidence and a call for action. N Z Med J 2016, 129(1444):103-110.

Antibiotic resistance is looming but we can protect the children
In another life I used to sit on teams that developed something called ‘clinical guidance’. We would draw together published evidence and make recommendations on what best practice should look like. I sat on one such group for rheumatic fever.
Rheumatic fever (RF) is a disease now seen mainly in developing countries (apart, of course, from the poor pockets of New Zealand where it runs at near epidemic rates). If rheumatic fever is not caught early, it leads to rheumatic heart disease (RHD) that in turn leads to serious heart damage – the sort of damage that can see people die in their late 30s.
On this rheumatic fever clinical guidance group that I sat on, I heard a story about the antibiotics that are used to treat the disease. I heard that many of the kids with rheumatic fever live rurally and getting treatment to them is a challenge. I heard that the antibiotics needed to be kept at temperatures lower than a few degrees. I heard that these antibiotics are often driven around the dusty roads of rural New Zealand in the height of a Kiwi summer, eventually getting to families warm and possibly no longer effective. What I heard was that kids who needed the antibiotics the most were being let down by basic logistical stuff-ups.
Is this story representative? Are vulnerable low-income children missing out on antibiotics? And if children are already missing out on antibiotics when they need them in New Zealand, how will population-wide antibiotic resistance affect these children? Children who, coming from low income families, are already at greater risk of infectious disease than other children in New Zealand?
The story for low-income kids and antibiotics is complex & resistance is not going to make things better
Children living on low incomes in New Zealand have more infections (requiring antibiotic treatment) than other children. Rheumatic fever is one disease they contract at higher rates, especially as overcrowding and poor quality housing continues unabated in Auckland. But we also know from the Child and Youth Epidemiology Service, who reports on child health in New Zealand each year, that skin infections plague children from poorer communities. We also know that respiratory infections put them in hospital at a much greater rate than others. And when diseases like measles break out, they tend to do so in low-income communities, with the bulk of the health effects being felt by the children of low -income families. These are the children who need antibiotics and need them to work. Even with antibiotics, children are still dying in New Zealand from diseases of the third world.
Poor children need antibiotics more than other children, but are they getting them?
The situation is complex. We have data showing us that antibiotic prescribing in Counties Manukau in Auckland (a large low-income community) is greatest for those living in overcrowded households [1]. Overcrowding is one of the indicators of poverty in New Zealand.
Below we can see the relationship between antibiotic prescribing and overcrowded households in Counties Manukau. We see as the ratio goes up (representing more people in a bedroom) antibiotic scripts rise too. This finding is understandable in the context of how infectious diseases spread – through close contact with other infected people.
But does the higher prescribing rate of antibiotics for the vulnerable mean all the children who need them are also getting them? A prescription for antibiotics is not a measure of antibiotics used. We can look at the dispensing of antibiotic use for some clues.
Researchers examined the dispensing of antibiotics (pharmacies filling a prescription) in another part of New Zealand. The town was a rural town at least an hour from other towns with a pharmacy. Researchers found that individuals living in lower income areas of that community were much less likely to be dispensed antibiotics.[2]
So we see that infections are higher for low-income children in New Zealand, and prescriptions may also be higher, but that actual use may be lower for this group.
Low-income children do have the worst access to healthcare in New Zealand
The data present a complex picture, but not one those working in health are unfamiliar with. It highlights what we see across all societies – those that need healthcare the most may be accessing it the least. We call it the inverse care law.
We can speculate based on this evidence what is happening with low-income children in New Zealand. It may be that children of low-income families are getting to the GP but not getting the antibiotics on board. It may be that even getting to the GP is such a challenge that low-income children are not being seen till very late – we certainly know that low-income children see medical professionals a lot later down the path of an infectious disease making treatment more difficult and spread and recurrence more likely.
It may be that low-income families cannot easily access the antibiotics even once they are prescribed. We know that in New Zealand the children who don’t get to the GP because they have no transport (a measure of material deprivation & poverty) are the children of low-income parents, as the data below demonstrates.
New Zealand has a government funded primary healthcare system, with free GP visits for children under 13 and low cost prescriptions. But in reality, there is an imbalance in who accesses this funded healthcare. It not just healthcare itself that costs families – the opportunities to access the care also costs: time off work; access to transport; being free of other health debts and social stigma; having someone who can care for any other children. These are all resources a parent needs to be able to draw upon to access healthcare for their child. In many cases, low-income families have fewer of all of these resources. While the data has gaps, it certainly indicates that there is likely to be a problem in terms of low-income children’s access to and use of antibiotics when they need them.
What happens when we add antibiotic resistance into the mix?
Nothing good. For children who need antibiotics the most, resistance has the most serious impact. For a group of children who are already disadvantaged by being poor, we have at least always had the hope that, if they can equitably access timely treatment, we can overcome some of the disadvantage they suffer. With resistance looming this will not be the case, and the children who will die at the greatest rate from what are now just everyday infections will of course be those already getting the worst deal from the imbalance in New Zealand society. But we can do something about this.
What can be done?
As always the ambulance parked at the bottom of the cliff will not assist us here. Research into antibiotic alternatives needs funding, and a huge reduction in unnecessary antibiotic use is needed (including in animals and farming).
However, there is something we can do right now for children living on low-incomes – we can correct the imbalance in their health outcomes through strong policy. Research tells us there are many effective ways to address this imbalance, and most of them lie outside of the control of the health workforce.
Bringing families with children up over the various poverty lines using unconditional cash assistance is an area that has significant potential to improve children’s health. Housing affordability, quality and access is another area with serious potential to improve low-income children’s health. The best evidence shows that improvements to the physical aspects of the home (e.g., ensuring it is the appropriate size for a family, it can affordably be kept warm, it is insulated and not damp) improves health (especially in those with existing respiratory illness), may improve and promote relationships in the family, and may reduce absences from school or work. The findings are especially applicable in low-income households where the need is greatest.[3]
The end of antibiotics as we know is upon us. However, in the time between their discovery and their demise, let us finally deliver for low-income children a good society, one that ensures we are all already in the same boat as we work to find solutions together.
References
[1] Walls, G., Vandal, A. C., du Plessis, T., Playle, V., & Holland, D. J. (2015). Socioeconomic factors correlating with community antimicrobial prescribing. NZ Med J, 128(1417), 16-23.
[2] Norris, Pauline, Gordon Becket, and Denise Ecke. “Demographic variation in the use of antibiotics in a New Zealand town.” The New Zealand Medical Journal (Online) 118.1211 (2005).
[3] Thomson H, Thomas S, Sellstrom E, Petticrew M. Housing improvements for health and associated socio-economic outcomes. Cochrane Database of Systematic Reviews 2013, Issue 2. Art. No.: CD008657. DOI: 10.1002/14651858.CD008657.pub2.
About
Dr Jess Berentson-Shaw works at the Morgan Foundation Policy Think Tank and writes about science, children and families at The Spinoff Parents. You can follow her on Twitter @DrJessBerentson
What is InfectedNZ?
Hey, Aotearoa. It’s time we had a chat about infectious diseases and what we’re going to do about the looming antimicrobial armageddon. That’s why we’ve asked leading health, social and economic researchers, and people with personal stories, to help us get real about our vulnerability and discuss solutions. Follow their blogs right here at tepunhahamatatini.ac.nz and watch the conversation spread across social media with #infectedNZ.
Backing it all up, wherever possible, is data from the good folk at Figure.NZ. Their super duper charts are based on data sourced from public repositories, government departments, academics and corporations. Check out their #infectedNZ data board and sign-up to create your very own data board on any topic that floats your boat.

Living with MRSA
Wash your hands all you want. Don’t touch things. Clean your cuts and grazes. Be careful all you can… but it won’t make any difference. An open wound will grow; it will cause rashes on your body and your skin to blister and weep. Once it’s in your blood stream, it goes wild, living in there like an uninvited guest crashing your dinner party.
It smells. I can smell it a mile away. Doctors laugh at you, but it definitely has its own smell. It stinks and to get rid of it, to try and get it to leave you completely, is like being entrenched in a war where no matter how hard you try the other side is always tougher.
I spit the words when I say them as it has haunted my life and my family’s life for so long. It enveloped my every waking moment, and every sleepless night, as I wished moment after moment it had never come into our lives.
It’s MRSA, a form of staph bug – a superbug which has nothing I deem “super” about it. To me, super is like a “super hero”, but the only hero when it comes to MRSA is those who battle it or those who are trying to cure it.
My little girl lived in hospital a long time battling gastrointestinal failure and the complications that accompany it. We were definitely no strangers to infections, spending weeks on end on all order of antibiotics for every different thing over years and years. That was my biggest worry then, and now. People used to say MRSA, MSBL, C.diff, and I used to just switch off; my child didn’t have them, so it didn’t matter.
Then one day, while she battled a burst gall bladder and just wouldn’t show signs of improvements as she had infection after infection, a doctor came into the room, gowned, gloved, and masked and said she has MRSA in her blood stream and it’s growing in her line and tubes.
Oh shit, I said. That’s all I said. I still didn’t register how much it would affect our lives.
We lived in the hospital and were always around and about, playing with nurses, in the play room; anything to pass the time. Now, once she recovered from the gall bladder incident, we couldn’t play; she still grew MRSA. Too many lines and tubes. No more playing with other children in hospital. No more playroom. We were stuck – isolated with a bug that was growing more resistant by the day and scared of spreading it around. And, of course, following strict hospital protocol around such bugs.
But, reality was, that’s nothing compared to the impact it had on my child physically. No longer are you just battling a medical condition but a serious infection on top. It rules your life and all the choices you make.
It leaks and oozes. Then you change a dressing and after multiple changes it then gets raw and oozy. Years of constant infections followed, and traumatic moments that I won’t relive here.
You think with an infection that doctors just get an antibiotic and treat it. If that doesn’t work, they will have another. The thing about a bug like this is you can get to the end of antibiotics, and those IVs take longer and longer before a solution is found. Within a week, after more and more attempts, it then doesn’t work at all. The bug lays dormant then sneaks up and flares up when you least expect it. One day nothing. Then you look the next day and see the familiar pale yellow ooze leaking out from a line and your heart sinks. You know it will get worse before it gets better.
The other thing people don’t get is the toll endless antibiotics takes on a body: thrush, reactions, tummy pain, puffiness, blowing lines. Endless and yet unavoidable. The constant fear of what next eats away at you as well as the constant worry about treatments not working. Even short term IV lines grew MRSA as we lost line after line and our vein access went from minimal to pretty much nothing.
The thing is, it’s a bug, you catch it. That brings a whole different sort of grief and anger compared to a condition you are born with or develop. Anger ruled my life. When MRSA flared up, I was often so scared as the violent convulsions from temperatures would take hold from another infection in the line. It had to be someone’s fault. I found people to blame and, to an element, I still do. But it’s nothing compared to the guilt and blame you place on yourself. As a mother, I should protect my children – the most precious things in my life.
Yet, while in my care, my child contracted a bug that was ravishing her poor little body. Did I not wash my hands enough? Did I not watch procedures close enough? Should she have sat on the ground when she did? So many stupid questions. When I’m not exhausted, and as life moves on, I know it’s a bug that’s everywhere. The longer you are in hospital, the more immune-suppressed you are, or just pot luck, you’re likely to contract a superbug. I just wish it hadn’t grown on my child. I wish it didn’t exist at all.
We don’t have a line now. The last growth of MRSA was followed by thrush in her blood stream and it meant the final access was to be removed. Reality is, any line is going to be an area likely to grow this bug.
The not sleeping at night as you check continuously for a line infection; the constant changing of painful dressing; the fear that this could be in her blood (and not picked up earlier) all dulled, as the risk is so much lower. But, unfortunately, it still rears its head, but in more fiddly ways. A skinned knee ends up more manky, the longed-for pierced ears mucky and taking longer to heal. It’s a relief to sleep easier at night but also a battle to keep a child with gut failure line-free.
Something good I realised, just the other day, was how improved her quality of life has become now that she hasn’t got a line oozing MRSA continuously. That bug took such a toll on her body that she was bloated and puffy from constant meds.
It’s been a really big and cruel lesson to learn how important the research being done to treat and cure Staph bugs is. It’s something you just wish no one had to deal with. It’s something I wish my family never had to deal with.
We need to find a cure.
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This post was provided by parent Tiff Mora.
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